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I am not aware of any skeletal muscles that don't go across a joint except, perhaps, the eye and facial muscles and the tongue.
Then tendons, ligaments, etc. Remember, I'm a mechanical/aero engineer, not an anatomy expert!
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Regarding the vibration isolator, even if you introduce a stiff member into the equation, the same amount of energy has to be absorbed. It will simply be absorbed differently.
Yes, but if your goal is attenuation, the response will be different. Those rubber isolators may give you 10% damping, which is significant. A metallic (or bone) rod will exhibit very minimal damping (less than 1%). If the goal is to attenuate or isolate, sticking a stiff member into the system is not the best idea. If you think of it in terms of a mass-spring-damper system, in one case (the stiff member) you'll oscillate for a long time. In the other case (rubber isolator) with the same initial conditions you'll damp out quickly. Same "energy" at the start, but completely different response.
I am not sure what your point is. The leg isn't primarily designed to "attentuate" vibrations but, rather to transmit and absorb energy in a way that allows us to walk and run efficiently (I don't think cycling was part of the evolutionary process). It is what it is. We are trying to use it for another purpose and we will invoke some, perhaps, different ways from how it was "designed" to transmit and absorb energy. I am not sure that it is necessary to fully understand every joule and where it goes. If we can understand that the energy lost really does vary with the square of the cadence then it might allow us to develop better strategies of minimizing the loss and maximizing the output. If we find that the loss varies directly with the cadence then it is probably not possible to develop better strategies. I think the evidence suggests the energy loss varies with the square of the cadence (whatever the mechanism(s)). If so, Chrissie racing at the low cadences she does, in relation to her competition, could, in part, explain her dominance.
Instead, misunderstanding about the energy cost of pedaling pervades the belief of the cycling "scientists" out there because they have used a totally useless model to look at the issue and, as a result, we get threads like this one.
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The body is more than just bones and muscles. Is is also a big fat water balloon. Me thinks the dynamics here as to what is going on could get very complicated. The fact that it is complicated isn't a particularly good reason to simplify the problem to the point of eliminating all the losses, which makes the problem pretty simple. Only problem is you assure your answers are going to be wrong. But, what do people care? As long as it sounds right and good, correct?
It all depends on the direction/location of the loading. As a doctor you should know this very well. The old tap test on the knee to test those reflexes. Whack the bone and you get one form of wave propagation. Whack the thigh and it's completely different. The attenuation and propagation of the stress wave is directionally and materially dependent.
Even if the body is a big water balloon, if you load through the spine it will hurt like hell! Do a thought experiment. Take your water balloon that has a steel rod through it. Put a strain gage and accelerometer on the rod. Drop the balloon/rod from a given height such that the impact direction is along the axis of the rod. Now drop it from the same height so the rod is in the plane of the ground. Being the drop height is the same, the potential energy is equivalent. What can you say about the stress and acceleration of the rod in these 2 cases?
I can't say anything about those two different scenarios because I have not been trained in this area except I can say they will be different. That is what forensic accident analysis is all about though so there are people who could probably answer that question. Experiments have been performed like that to help reconstruct accidents from which there are no survivors. I remember my brother-in-law telling me something about this. He was a military radiologist and he would be asked to xray dead pilots. By the type of fractures that were seen they could make assumptions as to whether the feet were on the rudders or the hands were on the throttles, or other things, at the time of impact, to help them analyze the accident.
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Frank,
An original Ironman and the Inventor of PowerCranks