In Reply To:
Forget the above equation.
Why don't you tell everyone here how one should design a model to look at potential internal losses. Is it a "best practice" to use a model that prohibits these losses?
Better yet, is it a reasonable engineering practice to do so when one knows that the laws of thermodynamics dictate that some losses must be there? That is what Dr. Coggan just told us all the so-called "scientists" are doing that is allowing them to reach this conclusion and with this knowledge it allows them to call anyone stupid who happens to disagree with them. Even though you joined in with them let me ask you what do you think of this engineering practice? Excellent, reasonable, shoddy, unacceptable?
Now through the 20 pages of rambling I've kind of forgotten what the point is, but I'm assuming it's to determine how the human engine affects final wheel horsepower via cadence, etc. If so, then if you really, really, really want to figure this out, what I would do:
1) build a dynamic model of the drivetrain which really isn't much more than relating pedal force to forward force of the bike (as simple as F=ma)
2) understand 1) with NO LOSSES
3) introduce drivetrain losses into the model
4) perform a parametric study of wheel horsepower as a function pedal force characteristics, drive train losses, rolling resistance, etc
5) neglect losses due to elasticity of the bike components (honestly, it's not needed)
6) once this model is well understood, move to the next step - model the legs and feet as a series of rigid bars and understand the kinematics of the pedaling motion
7) apply your torque at the hip and verify the model you created in steps 1-5 still works without losses
8) introduce those losses back in and verify it works still
9) take the losses out
10) do a parametric study of potential losses in the "legs"
11) add in the "bike" losses
12) from the hips up? Beats me. Consult an exercise physiologist
It all boils down to a building block approach. I've got some 20 years experience in modeling, yet when I make a new model I don't bite off everything at once. Baby steps and validation at each point. Even in this problem, the end point is just a premise. Without test data to back it up it's just a parametric study of what ifs.
Is it reasonable to neglect losses? You bet. We do it every day in engineering. From a structural dynamics perspective, we add "losses" in the form of structural damping mainly for 2 reasons: 1) make the system of equations more numerically stable and 2) to reduce the structural response/loads. Even with 2), we still use very conservative (i.e., low) damping. And things like hysteresis in materials (primarily due to plastic behavior) is only used when we are trying to pencil whip a bad stress issue, not as standard practice.