What goggles are you using?
As another poster suggested, have you tried to loosen you goggles a little bit?
Generally the softer tissue around your eyes is what is affected by goggles. Have you tried any larger socket goggles, or perhaps a swim mask? Not a suggestion that everyone wants to hear, but it is a choice that sits further out around your eye and the gaskets sit on the bone structure around your eye rather than on the softer tissue.
The larger lens goggles don't require as much pressure/ the straps don't need to be as tight, as they rely on a stronger seal than a smaller 2 piece competitive style goggle. You can loosen up on the straps and still have a water tight seal.
I highly recommend giving a larger lens goggle a shot. If you are already using them, try loosening the straps a little bit and don't press the sockets of the goggles on to your eyes, just put the goggles on and allow the strap pressure to help hold the seal.