Hi Hart,
Your experiment is admirable! Yes, a lower BB means less pedal clearance, all else equal.
As you mention, you could recalibrate your reactions, but there is another option. Take a look on cervelo.com for a question I answered about crank length here
http://cervelo.com/...e/crank-length/2954/ ... or just search this Slowtwitch forum for something like "crank length" to get a lot of info about perhaps changing your cranks to a shorter length.
Also have you considered a pedal with more lean angle?
The longest ride I had time for here was 100km, for me the longest for this time of year. We did go through Pajara, and also Betancuria and a few other villages. As you say, a really nice place to get in some kilometers!
Cheers,
Damon Rinard
Engineering Manager,
CSG Road Engineering Department
Cannondale & GT Bicycles
(ex-Cervelo, ex-Trek, ex-Velomax, ex-Kestrel)